PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016149-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 231aa    MW: 26018.8 Da    PI: 6.1692
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016149-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1513.1e-16125181359
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                            + kr +r+ +NRe+ArrsR+RK+a +  Lee v++L +eN +L +++ + ++++++ 
  SMil_00016149-RA_Salv 125 DTKRIKRMVSNRESARRSRRRKQAHLSDLEEQVEQLRGENASLFQQMANASNQYKNA 181
                            679*****************************************9999999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-16123187IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.128125177IPR004827Basic-leucine zipper domain
PfamPF001704.5E-14126180IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-13127180No hitNo description
SuperFamilySSF579591.27E-12127178No hitNo description
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDGKKALLKS RPLFGSRNMK KSESELALEE LFASDQDDKL GGSDQHAFFP IDNLHFNFKN  60
SEIHSSMSSF TENNYPFSAS PNLNPNPPKL STAIDSPLSI CVDSPQSDEE EYMEGDQYNH  120
NPADDTKRIK RMVSNRESAR RSRRRKQAHL SDLEEQVEQL RGENASLFQQ MANASNQYKN  180
AATNNRVLKS DVGALRAKVK LAEDLLARGS LTSSLTHLLH NYLNAPEDDY I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139146RRSRRRKQ
2141146SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082101.29e-61basic leucine zipper 9
SwissprotQ6H5001e-42RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A4D8YX711e-104A0A4D8YX71_SALSN; Uncharacterized protein
STRINGcassava4.1_012780m1e-51(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-25basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]