PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016222-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 238aa    MW: 27146.4 Da    PI: 9.9843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016222-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.9e-1617951498
                           T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                            r+ +p  ++e+ +++  +s++ +l++++g sWe+k+  r+ +++ +v+++GW +F++++ L+++Df+ F+++g+  f   v v++
  SMil_00016222-RA_Salv 17 ERMKVPSAYCEKLKQE--KSRKAVLKTPKG-SWEMKV--RRDDDGdIVFEDGWPRFARDHALNDRDFLAFEHTGNLHF--DVVVCD 95
                           4689******998755..7789*****998.8*****..6666656*************************8886666..676666 PP
2B341.32.7e-131492271289
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHH..HHHHT--TT-EEEEEE-SSSE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeF..vkangLkegDfvvFkldgrse 89 
                            ks  + +p +fa++ +++++  k ++l+d+++r+W ++li+++ +   + + +GW++F  ++a++Lk gD ++F+l+++s+
  SMil_00016222-RA_Salv 149 KSPVVGIPAQFARRSNLDSK--KSISLRDPKNRKWPINLIVKREPYFrVSMCGGWRDFyaANAKHLKIGDKCIFHLNSTSS 227
                            555678*********99954..56***************99877766688889*****4446789**********987644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.983497IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-16695IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-17795IPR015300DNA-binding pseudobarrel domain
CDDcd100178.26E-15795No hitNo description
SMARTSM010191.1E-9797IPR003340B3 DNA binding domain
PfamPF023625.5E-131795IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14133227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-14133228No hitNo description
SuperFamilySSF1019362.16E-13133226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.374138238IPR003340B3 DNA binding domain
SMARTSM010190.0012148231IPR003340B3 DNA binding domain
PfamPF023623.2E-11151227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAVGTKFVNI MMPDLMERMK VPSAYCEKLK QEKSRKAVLK TPKGSWEMKV RRDDDGDIVF  60
EDGWPRFARD HALNDRDFLA FEHTGNLHFD VVVCDARTAC EKKPIADCRN AMPQNQDKGK  120
AEKKGVIESQ IMPSFTIDIT PYIVPTKFKS PVVGIPAQFA RRSNLDSKKS ISLRDPKNRK  180
WPINLIVKRE PYFRVSMCGG WRDFYAANAK HLKIGDKCIF HLNSTSSTSK TAALDVEF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-16B3 family protein