PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016439-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 74aa MW: 8754.14 Da PI: 8.502

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016439-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.3	7e-10	3	42	4	43
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 ++++++eq++ Lee+F +++++ +++e+LA++lgL+ rq SMil_00016439-RA_Salv 3 KRKLSSEQVKMLEECFGSEQKLESDRKERLAAELGLDPRQ 42 45899********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	2.38E-5	2	42	No hit	No description
SuperFamily	SSF46689	5.99E-7	3	42	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-7	3	42	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.3E-9	3	42	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MRKRKLSSEQ VKMLEECFGS EQKLESDRKE RLAAELGLDP RQSTIEERFD LLQKISWKIK 60 VIFIVHISAN SYEL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097229.1	6e-15	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	2e-14	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A4D8YL29	1e-16	A0A4D8YL29_SALSN; Homeobox-leucine zipper protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-16	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]