PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016518-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 227aa    MW: 26008.5 Da    PI: 8.3236
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016518-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36241162103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+y ++ed++ + +isw++ g++fvv+++ efak++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF+++ F+kg
  SMil_00016518-RA_Salv  24 FLLKTYMMVEDPASDAVISWNDGGTAFVVWQPAEFAKDLLPTLFKHSNFSSFVRQLNTYGFHKVATNR---------WEFSNERFRKG 102
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            ++++l++i+r+k +
  SMil_00016518-RA_Salv 103 ERDQLCEIRRRKAT 116
                            ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-3717108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5220113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
LSVMECESER ELVEYVRKAS PPPFLLKTYM MVEDPASDAV ISWNDGGTAF VVWQPAEFAK  60
DLLPTLFKHS NFSSFVRQLN TYGFHKVATN RWEFSNERFR KGERDQLCEI RRRKATSNKQ  120
QRNVQLVQAA TSDHSDNEEL STSSSEITNL TDENKRLKRE NDALNSELLL LKRKCQQLVD  180
LVAVSGDAQK RPRPLQLRED GGQALKLFGV RLEVGSERVV SQFCKII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-24241134104Putative transcription factor
5d5x_B2e-24241134104Putative transcription factor
5d5x_E2e-24241134104Putative transcription factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075334.13e-90heat stress transcription factor B-3 isoform X1
SwissprotO222302e-64HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A4D9C5911e-121A0A4D9C591_SALSN; Heat shock transcription factor, other eukaryote
STRINGXP_008360667.17e-89(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-67heat shock transcription factor B3