PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016546-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 412aa MW: 45773.6 Da PI: 8.5395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016546-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	302	340	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq SMil_00016546-RA_Salv 302 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 340 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.11E-5	300	344	No hit	No description
SuperFamily	SSF47459	1.44E-10	300	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-9	304	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
LLAKKSFFFF CFFKLLILGF SSVLKKNYHL IMESANSHHH LQDQLVGSSA SSLPNYGVGF 60 TTTHAWPPSS FLNFNCLSSN SSERKQQENP SMAPDMGFNN WGSEQEVQHE CRIKEELADH 120 YYHKYSEILS SSSDELNLRN EQQGSDLQPN DVATKFLLKS LSSYGKINNA PDFYSNNNNT 180 NTTRQIFPEY SSFNIPPPGS LDMNLEALDL LVSSRFTGNF LASSHGQIGI LRDEFSTYGL 240 DQMHQSHQIP FYGSNKVSSA SSNAVTEAKR KSNKMEPKSQ IQKAPKKSRL EARSSCPPFK 300 VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ TQVETLSVPY MKASRNKTNR 360 VTKGGPVEIE NEEAKGDLKS RGLCLVPLSC LSYITDGGGP AVWPPPHFGG AT

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

LLAKKSFFFF CFFKLLILGF SSVLKKNYHL IMESANSHHH LQDQLVGSSA SSLPNYGVGF  60
TTTHAWPPSS FLNFNCLSSN SSERKQQENP SMAPDMGFNN WGSEQEVQHE CRIKEELADH  120
YYHKYSEILS SSSDELNLRN EQQGSDLQPN DVATKFLLKS LSSYGKINNA PDFYSNNNNT  180
NTTRQIFPEY SSFNIPPPGS LDMNLEALDL LVSSRFTGNF LASSHGQIGI LRDEFSTYGL  240
DQMHQSHQIP FYGSNKVSSA SSNAVTEAKR KSNKMEPKSQ IQKAPKKSRL EARSSCPPFK  300
VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ TQVETLSVPY MKASRNKTNR  360
VTKGGPVEIE NEEAKGDLKS RGLCLVPLSC LSYITDGGGP AVWPPPHFGG AT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083625.1	1e-135	transcription factor bHLH110 isoform X1
Refseq	XP_020550876.1	1e-135	transcription factor bHLH110 isoform X3
TrEMBL	A0A4D9AVK1	0.0	A0A4D9AVK1_SALSN; Uncharacterized protein
STRING	VIT_18s0001g12970.t01	1e-102	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-55	bHLH family protein