PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016591-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27340.4 Da    PI: 4.9872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016591-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1958111356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++t+eq++ Le+ F+ ++++  +++ eLAkklgL+ rqV +WFqNrRa+ k
  SMil_00016591-RA_Salv  58 KKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSK 111
                            56789***********************************************99 PP
2HD-ZIP_I/II126.21.5e-4057148192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl++eqv++LE+sF  e+kLep+rK+ela++Lglqprqva+WFqnrRAR ktk lE++y +Lk++yd+lk++ ++L +++e+L+
  SMil_00016591-RA_Salv  57 EKKRRLTAEQVQFLEKSFAVENKLEPDRKNELAKKLGLQPRQVAIWFQNRRARSKTKVLEREYGSLKSCYDKLKADYDTLFSDNEKLK 144
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +e++
  SMil_00016591-RA_Salv 145 NEVR 148
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-1942113IPR009057Homeodomain-like
PROSITE profilePS5007117.7553113IPR001356Homeobox domain
SMARTSM003891.2E-1856117IPR001356Homeobox domain
PfamPF000461.2E-1658111IPR001356Homeobox domain
CDDcd000866.02E-1658113No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1959119IPR009057Homeodomain-like
PRINTSPR000311.6E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.6E-693109IPR000047Helix-turn-helix motif
PfamPF021832.0E-15113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
LLNDERIPSD ALWIPNSSPS LHAMVSFEQS RGERSNRSRQ SDCDDEDSDS CFHRPPEKKR  60
RLTAEQVQFL EKSFAVENKL EPDRKNELAK KLGLQPRQVA IWFQNRRARS KTKVLEREYG  120
SLKSCYDKLK ADYDTLFSDN EKLKNEVRLL SGKLLQKGND EISPLDAAPC KQEDASSHSS  180
HVLEASDFEQ GDEDDECLVQ RLCLPKLEAE YYDDHLQPNS CNLGFPVQNQ GTWFWQC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-87homeobox-leucine zipper protein HAT5-like
TrEMBLA0A4D9APJ01e-132A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein
STRINGXP_009766848.18e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-42homeobox 1