PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016657-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 399aa    MW: 44266.1 Da    PI: 7.1064
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016657-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-13131190155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+ ++ a++k++g
  SMil_00016657-RA_Salv 131 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARSYDLAALKYWG 190
                            57*******************666664478446**********99*************98 PP
2AP250.45.7e-16233284155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  SMil_00016657-RA_Salv 233 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 284
                            57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.59E-21131200No hitNo description
SuperFamilySSF541713.14E-16131199IPR016177DNA-binding domain
PfamPF008479.9E-11131190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-15132198IPR001471AP2/ERF domain
SMARTSM003801.8E-26132204IPR001471AP2/ERF domain
PROSITE profilePS5103218.834132198IPR001471AP2/ERF domain
PRINTSPR003672.7E-6133144IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-18233293IPR016177DNA-binding domain
CDDcd000183.55E-11233292No hitNo description
PfamPF008472.4E-10233284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18234292IPR001471AP2/ERF domain
SMARTSM003807.9E-31234298IPR001471AP2/ERF domain
PROSITE profilePS5103219.111234292IPR001471AP2/ERF domain
PRINTSPR003672.7E-6274294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MYPQGELKEH GGVFTTYMQP PKLEDFFADG DSTETQDSSL THIYDHHHTA TYQDLNAISG  60
FQAFSANSGS EVDDPALTQS PVESASELVA YSQPPIATTN ALSLRVNDHK NSVADSGTCK  120
KIADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARS  180
YDLAALKYWG PTATTNFPIA NYTKELEEMK HATKQEFIAS LRRKSSGFSR GASIYRGVTR  240
HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN FEMNRYDVDA  300
IAKSPLPIGG SAKRMKVSLE AEEKLPCSSN SSSNINFSAI QPCGVPYDTA TPFYHHNLFH  360
HLGSGNLGAS DAAVSTMVVS PMSLMQSPPE FFMWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7844540.0KJ784454.1 Salvia miltiorrhiza AP3/EREBP Transcription Factors (WRI3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-141AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN60.0A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGXP_006466326.10.0(Citrus sinensis)
STRINGXP_007158361.10.0(Phaseolus vulgaris)
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-144AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]