PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016703-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 140aa    MW: 15415.3 Da    PI: 4.591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016703-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-11344854
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            Er+R +++N++f+ Lr+ lP+      +K +Ka++L  ++eY++sL
  SMil_00016703-RA_Salv  3 SERKRPEKLNDSFQILRSFLPPG-----TKKDKASVLSNTTEYLSSL 44
                           6********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.389144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-11150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-10249No hitNo description
Gene3DG3DSA:4.10.280.104.7E-12265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MISERKRPEK LNDSFQILRS FLPPGTKKDK ASVLSNTTEY LSSLKSQVAE LAKRNLLLES  60
HINSIQKSES DTDEAGSSWS GGEMISVEIA PVSSSSSSSE EARFLDLGCE FEIGGIEYED  120
VGINCNSILK TYMEMGPTRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574680.0KP257468.1 Salvia miltiorrhiza clone 35 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094007.13e-31putative transcription factor bHLH041
TrEMBLA0A0H3Y8T91e-96A0A0H3Y8T9_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009793632.14e-26(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-19bHLH family protein