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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | SMil_00016775-RA_Salv | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family | LBD | ||||||||
| Protein Properties | Length: 182aa MW: 20339.9 Da PI: 6.6477 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 57.4 | 4.4e-18 | 15 | 76 | 1 | 77 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77
+CaaCk+lrr+C ++C++a yf ae + +kll+++p+++red+++slvyeAe r++dPvyG+v
SMil_00016775-RA_Salv 15 PCAACKFLRRRCLSGCIFAAYFTAE---------------EPTKLLNEIPPHQREDTVKSLVYEAEDRLKDPVYGCV 76
7********************6555...............57899*******************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 1.3E-16 | 15 | 76 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 182 aa Download sequence Send to blast |
MASSSSSSSS YSNPPCAACK FLRRRCLSGC IFAAYFTAEE PTKLLNEIPP HQREDTVKSL 60 VYEAEDRLKD PVYGCVWGPS PFFSARSSPF SRSSTPPMLT SCASQPETEP RLPETTRDGL 120 GNQLMMELLL LQCEWVHLNQ PNQWNPLNTQ QKLKHPPEDQ FFHLHDCKFS SSSGSTYLSA 180 GS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5ly0_A | 7e-28 | 12 | 80 | 8 | 91 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 7e-28 | 12 | 80 | 8 | 91 | LOB family transfactor Ramosa2.1 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G63090.4 | 9e-28 | LBD family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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