PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016837-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 203aa    MW: 23285.4 Da    PI: 5.1937
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016837-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-201569256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++R +f+++q++ Le++Fe +  p  + +++LA+klgL+ rq+ +WFqN+Ra+ k
  SMil_00016837-RA_Salv 15 SRRKRFSDDQIKSLETMFETEARPELHLKQHLANKLGLQPRQIAIWFQNKRARSK 69
                           57999************************************************99 PP
2HD-ZIP_I/II106.32.3e-3416107293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            +++r+s++q+k+LE++Fe+e + e + K++la++Lglqprq+a+WFqn+RAR k+kq+E++y++Lk++yd+l+ + e+L+ke+++L  
  SMil_00016837-RA_Salv  16 RRKRFSDDQIKSLETMFETEARPELHLKQHLANKLGLQPRQIAIWFQNKRARSKSKQIEQEYSVLKSNYDNLALQFEALRKENQTLLV 103
                            799***********************************************************************************99 PP

            HD-ZIP_I/II  90 elke 93 
                            ++++
  SMil_00016837-RA_Salv 104 QVQK 107
                            9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.4751171IPR001356Homeobox domain
SMARTSM003898.3E-171375IPR001356Homeobox domain
SuperFamilySSF466893.46E-171383IPR009057Homeodomain-like
PfamPF000465.4E-171669IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-181678IPR009057Homeodomain-like
CDDcd000861.82E-141672No hitNo description
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PfamPF021838.5E-1571111IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LLLMSTSIKK GTKNSRRKRF SDDQIKSLET MFETEARPEL HLKQHLANKL GLQPRQIAIW  60
FQNKRARSKS KQIEQEYSVL KSNYDNLALQ FEALRKENQT LLVQVQKLRK MADNKDCEEN  120
DKNQIKLAAS EIPRLLLDIS GDELCMPLCS ELNGREDYLE EEADVLNMAQ IAESSLASPE  180
NGCSLESCTF LDNTGGTAQW WDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070385.11e-103homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A4D8YB511e-126A0A4D8YB51_SALSN; Homeobox-leucine zipper protein
STRINGMigut.E00626.1.p3e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-40homeobox 7