PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00016985-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 78aa MW: 8735.2 Da PI: 11.1852

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00016985-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.4	1e-30	23	72	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+av++LGG++kAtPk +l+lm+v gLt++hvkSHLQ SMil_00016985-RA_Salv 23 PRLRWTPDLHHCFVNAVDRLGGQDKATPKLVLQLMDVRGLTISHVKSHLQ 72 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-28	19	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.037	19	78	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-14	21	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-23	23	73	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	24	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MGSSSYGVGR NNGVRQYIRS KVPRLRWTPD LHHCFVNAVD RLGGQDKATP KLVLQLMDVR 60 GLTISHVKSH LQVSIILL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	24	72	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	24	72	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	24	72	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	24	72	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	24	72	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070508.1	5e-42	putative Myb family transcription factor At1g14600 isoform X1
Swissprot	Q700D9	2e-27	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A4D9A8Y9	5e-39	A0A4D9A8Y9_SALSN; Uncharacterized protein
STRING	VIT_01s0137g00050.t01	6e-37	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-32	G2-like family protein