PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017109-RA_Salv

Common Name

WRKY50

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 223aa MW: 25371.2 Da PI: 6.4032

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017109-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.3e-31	80	138	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ SMil_00017109-RA_Salv 80 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSADPNMLIVTYSCEHNHP 138 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-32	73	140	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-27	78	140	IPR003657	WRKY domain
SMART	SM00774	2.6E-37	79	139	IPR003657	WRKY domain
PROSITE profile	PS50811	32.524	80	140	IPR003657	WRKY domain
Pfam	PF03106	9.2E-27	81	138	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
LAAQKTMNSN RFSSSHFARE SENSSSPENS EDSPTSAMAK DLKITSKLRR SAVRKKVMSV 60 PIKDIERLRL KGDHVSAPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS 120 SADPNMLIVT YSCEHNHPPP SSRNIHHRPP PPAMSVSEEE LEEEEEEEDE YDEEGEKPRD 180 LVHNQSQELI LDNRFEGNLI CGGEFGWLTD FESTSCMILR VRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-22	55	141	6	80	Disease resistance protein RRS1
5w3x_D	2e-22	55	141	6	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM823173	0.0	KM823173.1 Salvia miltiorrhiza WRKY protein (WRKY50) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022847989.1	2e-70	probable WRKY transcription factor 65 isoform X2
TrEMBL	A0A0D5YA20	1e-131	A0A0D5YA20_SALMI; WRKY protein
STRING	XP_009595576.1	1e-60	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6475	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	8e-46	WRKY DNA-binding protein 65