PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017133-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 191aa MW: 21778 Da PI: 6.2596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017133-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.5e-08	21	64	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ Ed+++ da +++ g +W +I ++ g+++ +++ ++ SMil_00017133-RA_Salv 21 EWSWSEDKIFEDALVKFPEGtpdRWQKITGQLP-GKSERDVIAHY 64 5******************************.*******99 PP
2	Myb_DNA-binding	37.8	4.4e-12	108	152	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE++l++++ + +G +W++I+r + +R + q+ s+ qky SMil_00017133-RA_Salv 108 AWTVEEHKLFLRGLEIYGRSDWRSISRNVVVTRLPSQVASHAQKY 152 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.377	14	68	IPR017877	Myb-like domain
SMART	SM00717	2.9E-7	18	70	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-4	20	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-10	21	74	IPR009057	Homeodomain-like
CDD	cd00167	1.32E-5	21	68	No hit	No description
Pfam	PF00249	4.6E-6	21	65	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.225	101	157	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-9	101	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.8E-13	103	156	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-14	104	156	IPR006447	Myb domain, plants
SMART	SM00717	2.3E-10	105	155	IPR001005	SANT/Myb domain
CDD	cd00167	9.18E-8	108	153	No hit	No description
Pfam	PF00249	3.6E-10	108	152	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MNSMYSTQDS NGGESSMAAA EWSWSEDKIF EDALVKFPEG TPDRWQKITG QLPGKSERDV 60 IAHYEALVHD IAAIEAGEVE VPSYPEPRET RRRSVGSGGQ RERKKGRAWT VEEHKLFLRG 120 LEIYGRSDWR SISRNVVVTR LPSQVASHAQ KYFKRKELED KYRKRSSIHD ITTPDDADSS 180 LPETSDAEHN Q

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181867.1	1e-62	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-49	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2H5PNP1	3e-60	A0A2H5PNP1_CITUN; Uncharacterized protein
TrEMBL	V4U9T9	3e-60	V4U9T9_9ROSI; Uncharacterized protein
STRING	XP_006445756.1	5e-61	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19323	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-53	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]