PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017490-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 243aa MW: 27068.9 Da PI: 9.3678

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017490-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.6e-05	36	86	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r ++erE+ R+++N+ f+ L l + ++ + Ka++L +A + +k++q SMil_00017490-RA_Salv 36 KRIHKSEREKMKRENLNELFFALANSLELS----DQNNGKASVLIEASRTVKDMQ 86 68899**********************998....899999999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.73E-5	33	90	No hit	No description
SuperFamily	SSF47459	1.83E-11	33	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.055	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-8	35	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQPHINIAPI VKSKMAMATS TSGDVSSKKN NGKVPKRIHK SEREKMKREN LNELFFALAN 60 SLELSDQNNG KASVLIEASR TVKDMQDQIK CLKKENATLL SESQYVTVET NELKDENTAL 120 EAEIGKLRTE INSKTKLQLD LNMAPPECHN QEQGSHNIDS PFVFPVMKHG PQGHTVSPHL 180 ATFCSNIQGH PVVGIEHLAS KHISVVSKPH ARYLTPADKW PSQVLEKHPE LGKAVHQGYR 240 YGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853013.1	2e-91	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A4D9BIV4	1e-134	A0A4D9BIV4_SALSN; Uncharacterized protein
STRING	Migut.D01831.1.p	6e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-42	bHLH family protein