PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017508-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 409aa    MW: 44907.9 Da    PI: 6.38
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017508-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-08311351954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  SMil_00017508-RA_Salv 311 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 351
                            69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.307302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-14308360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-12310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5311351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-5324356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDNIDWGNEL EESFIMSSSI SLPYYNNNKI ETISSKLDTY SPVHQQMQKT EILSNILPQQ  60
WNSRSGAGSG WGVAINAGAT TSGSFIECSR PSALNTTPLK NSIIDDTNVL EQHPPMAANA  120
AASFESLDCL LSASTTDTTT SADQDDGISL IFSDCQNLWN FAKSGKTTIT PVSRNSEEIV  180
NNRSKRKREA ATSEPIGLTE LDFQSNYSDH GNGSGGFQII SENQQKSTKK ARLDQKQPLP  240
VINSSSSNIN FQQPSSSASS GDEQDAEAIA QMKEIIYRAA AFRPVNFGAE AMEKPKRKNV  300
RVSSDPQTVA ARQRRERISE RIRVLQKLVP GGSKMDTASM LDEAANYLKF LRSQVKALEA  360
LGQKSVIDPT VHNFPANTNL AFSSPFLSYS FAMQQQPQFS IHNPNQFKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316RQRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574710.0KP257471.1 Salvia miltiorrhiza clone 38 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072458.11e-108transcription factor bHLH87 isoform X1
SwissprotQ8S3D23e-75BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0H3Y7I10.0A0A0H3Y7I1_SALMI; Basic helix-loop-helix transcription factor
STRINGPOPTR_0001s19250.12e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]