PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017718-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 220aa    MW: 24878.9 Da    PI: 9.4695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017718-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.54.9e-17156201247
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv 47 
                            dDgy+WrKYGqK++ g+++prsYYrCt+++ +   +  ++++++k+
  SMil_00017718-RA_Salv 156 DDGYSWRKYGQKDILGAKYPRSYYRCTYRQGRNVGQRSKCRDQTKM 201
                            8***************************976655555555544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-16148215IPR003657WRKY domain
SuperFamilySSF1182901.44E-14154213IPR003657WRKY domain
SMARTSM007747.3E-13155216IPR003657WRKY domain
PfamPF031064.7E-14156214IPR003657WRKY domain
PROSITE profilePS5081116.398156217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
LNEHRFVEIG PPSFPQESHS KSKSKKMERV STWDLKVLTD ELAQGMEKAM QLRFHLCSTS  60
HSEAEDLILQ RIISTFEKAL CILKCGGHVG VAHVGAQAAA PESSISADGS SRSDDTNKNI  120
KEYQEQGYAS KKRKLQPTWT EQVKVNSENG LEGPGDDGYS WRKYGQKDIL GAKYPRSYYR  180
CTYRQGRNVG QRSKCRDQTK MPPYLRSHTK EHTHANSSIM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231340.0KM823134.1 Salvia miltiorrhiza WRKY protein (WRKY11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101023.15e-72probable WRKY transcription factor 53
TrEMBLA0A0D5Y9911e-116A0A0D5Y991_SALMI; WRKY protein
STRINGMigut.E01246.1.p9e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-30WRKY family protein