PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017741-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 188aa MW: 21730.6 Da PI: 7.5446

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017741-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.5	2e-43	7	140	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 GfrF Pt+eel+++yL++k+e ++ +++++vi+ +diy+++Pw+Lp+ +++++++w+fF++r++++ +g r++r+t+sgy SMil_00017741-RA_Salv 7 TGFRFFPTEEELISFYLHNKLEVEEdkssNNIHRVIPILDIYELDPWQLPThcgeLCDGDTEQWFFFMPRQEREVHGGRPRRTTASGY 94 7*****************9988865656666689999*******535543344777********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ +v+s++++++g+kk++vfykgrap+g+kt W m+eyr+ SMil_00017741-RA_Salv 95 WKATGSPSHVYSSENKVIGVKKSMVFYKGRAPTGRKTVWKMNEYRA 140 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.821	5	164	IPR003441	NAC domain
SuperFamily	SSF101941	5.49E-45	6	163	IPR003441	NAC domain
Pfam	PF02365	2.3E-22	7	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEEMTTTGFR FFPTEEELIS FYLHNKLEVE EDKSSNNIHR VIPILDIYEL DPWQLPTHCG 60 ELCDGDTEQW FFFMPRQERE VHGGRPRRTT ASGYWKATGS PSHVYSSENK VIGVKKSMVF 120 YKGRAPTGRK TVWKMNEYRA IQQDRTTSMP ILRHEMCLCR VYVVSGSSRA FDRRPTSAPE 180 ASPAGDVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-34	8	169	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-34	8	169	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-34	8	169	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-34	8	169	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	8	169	23	173	NAC domain-containing protein 19
3swm_B	1e-33	8	169	23	173	NAC domain-containing protein 19
3swm_C	1e-33	8	169	23	173	NAC domain-containing protein 19
3swm_D	1e-33	8	169	23	173	NAC domain-containing protein 19
3swp_A	1e-33	8	169	23	173	NAC domain-containing protein 19
3swp_B	1e-33	8	169	23	173	NAC domain-containing protein 19
3swp_C	1e-33	8	169	23	173	NAC domain-containing protein 19
3swp_D	1e-33	8	169	23	173	NAC domain-containing protein 19
4dul_A	9e-34	8	169	20	170	NAC domain-containing protein 19
4dul_B	9e-34	8	169	20	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012838527.1	2e-98	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A4D9BZ26	1e-115	A0A4D9BZ26_SALSN; Uncharacterized protein
STRING	Migut.N02478.1.p	6e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-82	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]