PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017818-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 273aa    MW: 30907.1 Da    PI: 7.817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017818-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-1483134155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  SMil_00017818-RA_Salv  83 QRMTHIAVERNRRRQMNDYLAVLRSIMPPS---YTQRGDQASIVGGAINFVKELE 134
                            79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-1381138No hitNo description
SuperFamilySSF474591.57E-1681151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23782133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1383147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-988139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAALTVQHDP FIYSCKDYTY NMEEEKPNPR NVEIYGEYWE SPPSSAAQAA ISSPETCGSP  60
TGKCRRKRRR VKPTKNKEEM ENQRMTHIAV ERNRRRQMND YLAVLRSIMP PSYTQRGDQA  120
SIVGGAINFV KELEQLQQFL EANNQQQPNE KLFSKFFTFP QYSTCPSTTT SAAVDAVAER  180
RSSIADIEVM MVESHANIKL STKRRPKQLL KLVAGFQSIG LTILHLNITT VDQSVLYSLS  240
VKVEVECQFT TVNEIATTVH DIVGMIQEES ICS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569RKRRR
26572RKRRRVKP
36670KRRRV
48394RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574730.0KP257473.1 Salvia miltiorrhiza clone 40 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100183.21e-137LOW QUALITY PROTEIN: transcription factor bHLH96-like
SwissprotQ9C7T42e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0H3Y8U20.0A0A0H3Y8U2_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_010272971.11e-101(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]