PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017842-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 290aa MW: 33303.4 Da PI: 4.8413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017842-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.1e-55	31	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+t SMil_00017842-RA_Salv 31 LPPGFRFHPTDEELVNYYLKRKIQGQEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKST 117 79**************************.99**********85335566888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v+s ++++vg+kktLv+y+grap+g +tdWvmheyrl SMil_00017842-RA_Salv 118 GKDRRVTS-QNRAVGMKKTLVYYRGRAPQGIRTDWVMHEYRL 158 ****.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-61	25	203	IPR003441	NAC domain
PROSITE profile	PS51005	59.063	31	203	IPR003441	NAC domain
Pfam	PF02365	3.0E-30	32	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MELYKSHMMV VLLEHFKSGA GGGIIMAPVG LPPGFRFHPT DEELVNYYLK RKIQGQEIEL 60 DIIPEVDLYK CEPWELADKS FLPSRDPEWY FFGPRDRKYP NGFRTNRATR AGYWKSTGKD 120 RRVTSQNRAV GMKKTLVYYR GRAPQGIRTD WVMHEYRLDD KEWEDVSGIQ VLDLLSDKVS 180 SFTLSFNNNE TKDSYALCRV FKKNGLCSEV EELGQSSSIP LLDHYMQGAS NEHETMSPDF 240 PLASSSTICM EEEDKDDKDE SWMQFITDDV WCSSSATFGG EEVSHMGFTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-53	27	158	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548077.1	1e-152	NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	8e-83	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A3N7FT43	1e-143	A0A3N7FT43_POPTR; Uncharacterized protein
STRING	Migut.O00243.1.p	1e-150	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-117	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]