PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017887-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 315aa MW: 34823.5 Da PI: 6.7486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017887-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	184	222	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq SMil_00017887-RA_Salv 184 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 222 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-8	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-11	182	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.20E-6	182	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MMAGNPNWWS MNGMHPQLSS QLIYGASNSP NPSPPDLHHP SPDFPVRSWS QLLLGGEGER 60 YGAGLFQQQK KIENWEEQVL NLNPSFTRNN IPVGDVKQES THMNYTHVDD EEQFHPWPRQ 120 QLAASCVTTL TNNTVFNFST AAAQSKNQHH NQDHSSECNS TSTGGVSKKA RVQQSSTQPA 180 LKVRKEKLGD RITALHQLVS PFGKTDTASV LSEAIGYIRF LQGQIEALSS PYMRNAAGNT 240 HHQHSVQERN CLFPEEPSQF LNDISMEGRG ASNQDSQVKD LRSRGLCLVP ISCTQHVGNE 300 NGADYWAPAA FGGGF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072388.1	1e-146	transcription factor bHLH68 isoform X2
Swissprot	Q8S3D1	1e-67	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A4D8YLC9	1e-162	A0A4D8YLC9_SALSN; Uncharacterized protein
STRING	Migut.I00932.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-67	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]