PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00017928-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

WRKY

Protein Properties

Length: 238aa MW: 25815.2 Da PI: 5.1008

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00017928-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73.7	2.3e-23	49	101	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC + k+vers ++ Y++eH+h+ SMil_00017928-RA_Salv 49 ADSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAASKQVERSP------KVSYSSEHTHP 101 69**********************9988********......89******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-24	34	103	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-21	41	103	IPR003657	WRKY domain
PROSITE profile	PS50811	25.626	43	103	IPR003657	WRKY domain
SMART	SM00774	9.2E-26	48	102	IPR003657	WRKY domain
Pfam	PF03106	4.6E-20	50	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKNQENVQFN IGSPPQNFPG AIPQPVRPRR RKNQQMKMVR QMTQEELSAD SWAWRKYGQK 60 PIKGSPYPRN YYRCSTSKGC AASKQVERSP KVSYSSEHTH PRPTHQSSLA GSTRSKLASP 120 PPKGGINSAV LSQKGSMASS SSLPATGASF SPDTPTIDAE AAVQNDDVQM AEEDDGAGDE 180 DDENIIMIPS DLMNDDDDMF RGFQDSEDHS SGSGGDFFSM SSPPWTSTSS PGTFNGGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-16	50	104	18	80	Disease resistance protein RRS1
5w3x_D	1e-16	50	104	18	80	Disease resistance protein RRS1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	31	PRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM823141	0.0	KM823141.1 Salvia miltiorrhiza WRKY protein (WRKY18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020548861.1	7e-92	probable WRKY transcription factor 27 isoform X1
Swissprot	Q9FLX8	1e-40	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A0D5Y990	1e-128	A0A0D5Y990_SALMI; WRKY protein
STRING	Migut.F00276.1.p	1e-66	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13860	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-42	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]