PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017985-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 108aa    MW: 12736.5 Da    PI: 8.3151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017985-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-092056137
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                           +g+WT+eEd++l  +v+q+   +W + ++  g+ R++
  SMil_00017985-RA_Salv 20 KGAWTQEEDDKLRAYVEQYSHCNWPLLPKFAGLDRCE 56
                           79***************************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-111358IPR009057Homeodomain-like
SuperFamilySSF466891.72E-81558IPR009057Homeodomain-like
PROSITE profilePS500906.5391558IPR017877Myb-like domain
PfamPF002491.0E-62058IPR001005SANT/Myb domain
CDDcd001672.40E-42258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
LIQGENMVKG TYVDKNGVRK GAWTQEEDDK LRAYVEQYSH CNWPLLPKFA GLDRCELQTA  60
MDELLETRPQ TRDIGLYPRR RRSYCKTSSA IWKQVSHYDH VVCKVTWE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571043.19e-19transcription factor MYB4-like
STRINGLus100185187e-20(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-13myb domain protein 9