PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018221-RA_Salv
Common NameMYB20
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 184aa    MW: 21353 Da    PI: 8.4685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018221-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-16855148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W +eEd +l+ av+ lG ++W++ a+  g++R++k+c++rw +yl
  SMil_00018221-RA_Salv  8 KGPWLEEEDNQLAAAVAVLGDKRWDALAKASGLRRSGKSCRLRWMNYL 55
                           79********************************************97 PP
2Myb_DNA-binding53.74.8e-1762105247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            g+ + eE+ +++d+++++G++ W++Iar+++ gRt++++k++w+++
  SMil_00018221-RA_Salv  62 GNISVEEERIIIDLHQKWGNR-WSKIARRLP-GRTDNEIKNYWRSH 105
                            56789****************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.716155IPR017930Myb domain
SuperFamilySSF466897.86E-286102IPR009057Homeodomain-like
SMARTSM007172.0E-13757IPR001005SANT/Myb domain
PfamPF002491.6E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20962IPR009057Homeodomain-like
CDDcd001675.38E-91055No hitNo description
PROSITE profilePS5129425.06556110IPR017930Myb domain
SMARTSM007178.3E-1660108IPR001005SANT/Myb domain
PfamPF002495.3E-1562105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2463109IPR009057Homeodomain-like
CDDcd001673.28E-1165105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQEAEVRKGP WLEEEDNQLA AAVAVLGDKR WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGNISVEEER IIIDLHQKWG NRWSKIARRL PGRTDNEIKN YWRSHSKKKA PVMDKECTKN  120
TSLRSECATT TPIKSDIFDA TTSPYEARLT DWMSNWPPDD SLDSKLYSPE WSSTTWDISL  180
WDGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2651101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593740.0KF059374.1 Salvia miltiorrhiza MYB-related transcription factor (MYB20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094730.15e-87transcription factor MYB27
SwissprotQ9SCP11e-53MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A059PRR21e-132A0A059PRR2_SALMI; MYB-related transcription factor
STRINGMigut.J00446.1.p2e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-56myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]