PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018283-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 208aa    MW: 24636.5 Da    PI: 10.4947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018283-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1966118456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            + ++++eqle Le+ F+++ ++  +++ +LAk+lgL+ rq+ +WFqNrRa++k
  SMil_00018283-RA_Salv  66 KKRLSNEQLELLENSFHEEIKLEPDRKMKLAKELGLQPRQIAIWFQNRRARWK 118
                            5569************************************************9 PP
2HD-ZIP_I/II1231.5e-3965155292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kk+rls+eq++lLE+sF+ee kLep+rK++la+eLglqprq+a+WFqnrRAR+k k+lE+ y+aLk++yda+++++++L++ev +Lr+
  SMil_00018283-RA_Salv  65 KKKRLSNEQLELLENSFHEEIKLEPDRKMKLAKELGLQPRQIAIWFQNRRARWKGKRLEHLYDALKQEYDAVARDKHKLQQEVIALRA 152
                            9**************************************************************************************8 PP

            HD-ZIP_I/II  90 elk 92 
                             lk
  SMil_00018283-RA_Salv 153 ILK 155
                            876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1947120IPR009057Homeodomain-like
SMARTSM003899.8E-1863124IPR001356Homeobox domain
PROSITE profilePS5007116.58465120IPR001356Homeobox domain
CDDcd000868.75E-1565118No hitNo description
PfamPF000461.4E-1666118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-2067127IPR009057Homeodomain-like
PRINTSPR000315.2E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000315.2E-6100116IPR000047Helix-turn-helix motif
PfamPF021832.6E-7120154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDWNGNIKMP YVSRPVDTSN FSSLYNCSFD HFPGLEMKQQ TMLPMIMNKN MNMNMNMNNL  60
GVDPKKKRLS NEQLELLENS FHEEIKLEPD RKMKLAKELG LQPRQIAIWF QNRRARWKGK  120
RLEHLYDALK QEYDAVARDK HKLQQEVIAL RAILKDQVDK KLVLSTGYTD ILGEEQLKAH  180
PFQAPTTTLP RRQRRWRAFT RLRNATTH
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101501.19e-83putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR04e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A4D9AFU65e-91A0A4D9AFU6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.J00491.1.p3e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-38homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]