PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018321-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HB-other
Protein Properties Length: 390aa    MW: 42681.2 Da    PI: 8.6026
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018321-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-0721741455
                           HHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
               Homeobox 14 eLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                            +e+  + ++y  ps+e  e LA++           +++ +qV +WFqNrR+  
  SMil_00018321-RA_Salv 21 DMEAILQAHNYtvPSREILEALAQRFsnsaeragkvEVSGKQVWNWFQNRRYAL 74
                           555555554433499999999999999999999999***************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-9476IPR009057Homeodomain-like
SMARTSM003890.0047781IPR001356Homeobox domain
CDDcd000869.36E-51375No hitNo description
Gene3DG3DSA:1.10.10.606.9E-71381IPR009057Homeodomain-like
PROSITE profilePS500718.9891377IPR001356Homeobox domain
PfamPF000463.6E-51674IPR001356Homeobox domain
PfamPF167195.1E-34150256IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNPVEVG DMEAILQAHN YTVPSREILE ALAQRFSNSA ERAGKVEVSG  60
KQVWNWFQNR RYALRAKAAR TSAPGEVNMQ AVPRDDQSVV RNVPQAPQPQ VSQPPPAPPN  120
MVRSMPQFPQ PPPAQPAQNA TRSVSENSLM EFEAKSARDG AWYDVASFLS HRSVESGDPE  180
AMVRFAGFGQ EEDEWVNIRR HIRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV  240
LDAQRRRHDV RGCRCRQFKS SLAPILHLLQ EIVPLRKICR RPETDHRLQQ LHAMPVNMNP  300
QKTVIQVQAG NALKVDAADS AIPKQQPKQD ERIDTSSSTT ASVTPSAVPV PTESKLLPSK  360
ATGAGNATAE ANTVAVSAAG GGAVPSLPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-381502834134SHH1 SAWADEE
4iur_B4e-381502834134SHH1 SAWADEE
4iut_A4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-381502834134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098266.11e-180protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A4D8Z0A30.0A0A4D8Z0A3_SALSN; Uncharacterized protein
STRINGMigut.M00766.1.p1e-163(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.21e-107sequence-specific DNA binding transcription factors;sequence-specific DNA binding