PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018460-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 136aa    MW: 15557.3 Da    PI: 6.3478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018460-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000432547123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C  C++ F++   L  H++ H
  SMil_00018460-RA_Salv 25 YDCAFCKRGFTNAQALGGHMNIH 47
                           88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.74E-72252No hitNo description
Gene3DG3DSA:3.30.160.602.5E-42351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEQEKIESSS AENDQNKQPS SGRSYDCAFC KRGFTNAQAL GGHMNIHRKD KAKKKKKNQE  60
VIQSFSSGYA GRHVNCQVYM PPPNPGLQTG NYEYCFFPVW RPDNLPDHID GPRSLMHVED  120
EDEEEVDLEL RLGRLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157AKKKKKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091220.13e-27transcriptional regulator SUPERMAN
TrEMBLA0A4D9BT341e-34A0A4D9BT34_SALSN; Uncharacterized protein
STRINGXP_009613300.13e-21(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-12C2H2 family protein