PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018530-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 213aa MW: 23130.4 Da PI: 5.9222

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018530-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.5	9.8e-43	56	155	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da++s+vyeA+ar+rdPvyG++g i +lq+q++ SMil_00018530-RA_Salv 56 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEDQRADAVNSMVYEANARLRDPVYGCAGAICHLQKQIS 143 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +l+aela++++e SMil_00018530-RA_Salv 144 ELQAELARAQAE 155 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.332	55	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-43	56	153	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
LPPHPTPPPH RDIIMAYSGN SSANAAAAEG SISAVSPTSS SSPPSSPPSP PVILSPCAAC 60 KILRRRCVEK CVLAPYFPPT EPLKFTIAHR VFGASNIIKL LQELPEDQRA DAVNSMVYEA 120 NARLRDPVYG CAGAICHLQK QISELQAELA RAQAEILNIQ CQNSSLFELI CKQMSAKTHN 180 DEENPQPPQP FHDNSAFLLD ESILGVAWEP LWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	48	161	3	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	48	161	3	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077047.1	3e-90	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A4D9AES9	1e-102	A0A4D9AES9_SALSN; Uncharacterized protein
STRING	Migut.F02029.1.p	3e-90	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-62	LOB domain-containing protein 1