PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018618-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 245aa    MW: 27976.8 Da    PI: 10.1583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018618-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.89.1e-323488155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprlrWt+eLH++Fv av++LGG++kAtPk+++++m v+gLtl+h+kSHLQkYR+
  SMil_00018618-RA_Salv 34 KPRLRWTSELHHQFVAAVDRLGGAHKATPKSLMRIMAVDGLTLYHLKSHLQKYRM 88
                           79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.0873191IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-303289IPR009057Homeodomain-like
SuperFamilySSF466891.0E-153389IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-223488IPR006447Myb domain, plants
PfamPF143792.3E-21122168IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MHVSNLATLK NKKILLMYNN NNNKMRLLLS SDAKPRLRWT SELHHQFVAA VDRLGGAHKA  60
TPKSLMRIMA VDGLTLYHLK SHLQKYRMGR SHQNKQQNSD EKTSRQSTNK TTRDSSTTEN  120
LPMTRALQMQ MEVQRKLHEQ IEVQKDLQLR VEAQGKYLQR VVRKAQETIS EYGSCSIEAE  180
HARAQLAELA SMVDSVESSL TSSSEASTQR CQLRERSFLS LSLHPEESID LNCTKSVPKF  240
IDLNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-213490157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-213490157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-213490157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-213490157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070990.15e-77myb family transcription factor PHL8
SwissprotF4I2743e-61PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A4D8YTI72e-97A0A4D8YTI7_SALSN; Uncharacterized protein
STRINGMigut.E00086.1.p3e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.15e-61G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]