PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018740-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 166aa    MW: 17986.6 Da    PI: 10.2414
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018740-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.5e-40311321101
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p+++r+da+ ++ yeA+ar++dPvyG+v++i +lqqq+
  SMil_00018740-RA_Salv  31 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPPNRRHDAVVTISYEAQARLSDPVYGCVSTIIALQQQV 118
                            7***********************9989************************************************************ PP

                 DUF260  88 eqlkaelallkeel 101
                            ++l+ael++++++l
  SMil_00018740-RA_Salv 119 ASLQAELSVVQTQL 132
                            *********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.29130132IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3931129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDVPPQDDGT SDSRRKGPGK RSAEAPPPNA PCGACKFLRR KCISGCIFAP HFGSDQGAAR  60
FAAVHKVFGA SNVSKLLLHI PPNRRHDAVV TISYEAQARL SDPVYGCVST IIALQQQVAS  120
LQAELSVVQT QLMNSRYVMA NAFQIHHSSS SSSRFVIPTL LRLRTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-40261376114LOB family transfactor Ramosa2.1
5ly0_B2e-40261376114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070190.18e-88LOB domain-containing protein 20
RefseqXP_020547496.18e-88LOB domain-containing protein 20
SwissprotQ9SRV32e-73LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A4D8ZFX62e-94A0A4D8ZFX6_SALSN; Uncharacterized protein
STRINGXP_009779769.17e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-75LOB domain-containing protein 20