PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018832-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 376aa    MW: 43844 Da    PI: 8.8457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018832-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-054569123
                           EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                           + C+  dC  s++rk++L+rH+  H
  SMil_00018832-RA_Salv 45 FICSvdDCESSYRRKDHLNRHMLQH 69
                           789999****************988 PP
2zf-C2H213.40.000237499123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                           ++Cp   C+++F+ + n++rH +  H
  SMil_00018832-RA_Salv 74 FECPveGCKTMFTLQGNMTRHVKDfH 99
                           89*******************98766 PP
3zf-C2H212.90.00034130154223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            +Cp  dC+++F+ + ++  H +  H
  SMil_00018832-RA_Salv 130 ECPvkDCKRTFKLQGYMAWHVKEyH 154
                            69999****************9888 PP
4zf-C2H215.74.1e-05168192123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            ++C   +Cgk+F+ +s L +H  +H
  SMil_00018832-RA_Salv 168 HVCAetHCGKVFRYPSKLYKHEDSH 192
                            789999***************9888 PP
5zf-C2H221.46.6e-07259283223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            +C+   C+ +FsrksnL++H++  H
  SMil_00018832-RA_Salv 259 SCSvkGCSLTFSRKSNLNKHMKAvH 283
                            588889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-74271No hitNo description
Gene3DG3DSA:3.30.160.606.8E-104271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7434574IPR007087Zinc finger, C2H2
SMARTSM003550.00264569IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804769IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-57299No hitNo description
Gene3DG3DSA:3.30.160.605.2E-57299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.01474104IPR007087Zinc finger, C2H2
SMARTSM003550.0127499IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807699IPR007087Zinc finger, C2H2
SMARTSM003550.088129154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131154IPR007087Zinc finger, C2H2
SMARTSM003551.7168192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242168197IPR007087Zinc finger, C2H2
PROSITE patternPS000280170192IPR007087Zinc finger, C2H2
SMARTSM003553200225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
SMARTSM0035529228249IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-6239280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-9240299No hitNo description
PROSITE profilePS5015712.05258288IPR007087Zinc finger, C2H2
SMARTSM003553.2E-4258283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260283IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5287311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512289315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
LDPNKKNSKM REATNLDWIS TRWVTAWEAP SSVPRSRLLF LERPFICSVD DCESSYRRKD  60
HLNRHMLQHQ GKLFECPVEG CKTMFTLQGN MTRHVKDFHC ESAPTDIEHP KESNCGKLHK  120
HEDSQEKLLE CPVKDCKRTF KLQGYMAWHV KEYHGESAFT DVKHTTEHVC AETHCGKVFR  180
YPSKLYKHED SHVKLDSLEA YCAEPGCMKY FSNERCLKEH IRSCHQYVLC DECGNKQLKK  240
NIKRHMRMHE AEHSSGRISC SVKGCSLTFS RKSNLNKHMK AVHLKLKPFA CGMPGCDKRF  300
TFKHVRNNHE KSSCHVYTPG GDFEASDEQF RSRPRGGRKR KYPVIETLMR KRIVPPSESE  360
LAMNEGQDYP SWQFSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332340RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.11e-136transcription factor IIIA
SwissprotQ84MZ41e-111TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A4D8Z9A30.0A0A4D8Z9A3_SALSN; Uncharacterized protein
STRINGMigut.K00168.1.p1e-121(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-114transcription factor IIIA