PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00018836-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 369aa MW: 40519.1 Da PI: 6.8573

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00018836-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	283	328	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k s a++L +Av+YIk+Lq SMil_00018836-RA_Salv 283 SIAERVRRTRISEKMKKLQDLFPNM----DKQTSTADMLDLAVQYIKDLQ 328 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.627	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-15	280	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.13E-11	281	332	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	282	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-12	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	283	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSRNSSYLLP NPSNDGGFKS RDSMGSDLFL NQQQSNQQGL ARYRSAPSSL LAALLDSTTE 60 NSSSGDESEA LLSALMDGPR DLNQIQKGGN PMHYHLKQEV GAESEPRPGH MGYESASSSP 120 AGFFNGYGIM GEVEDYRVQN HSKASSSAAG GLSSHISFSS SRFMPSIPEN VNESIANATR 180 NPENGQLGSA NAREFDALFP QDSWNDTPFS SLKRNRDHMF SNFNGLESQS GETRRSPHGL 240 VHHLSLPKTA TEMAELDKFL QAQPDTSPCQ IRAKRGCATH PRSIAERVRR TRISEKMKKL 300 QDLFPNMDKQ TSTADMLDLA VQYIKDLQVQ VETLTEMKAK CVCSIKPQQT VEGALSVVDV 360 GRLPPTMRM

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSRNSSYLLP NPSNDGGFKS RDSMGSDLFL NQQQSNQQGL ARYRSAPSSL LAALLDSTTE  60
NSSSGDESEA LLSALMDGPR DLNQIQKGGN PMHYHLKQEV GAESEPRPGH MGYESASSSP  120
AGFFNGYGIM GEVEDYRVQN HSKASSSAAG GLSSHISFSS SRFMPSIPEN VNESIANATR  180
NPENGQLGSA NAREFDALFP QDSWNDTPFS SLKRNRDHMF SNFNGLESQS GETRRSPHGL  240
VHHLSLPKTA TEMAELDKFL QAQPDTSPCQ IRAKRGCATH PRSIAERVRR TRISEKMKKL  300
QDLFPNMDKQ TSTADMLDLA VQYIKDLQVQ VETLTEMKAK CVCSIKPQQT VEGALSVVDV  360
GRLPPTMRM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257480	0.0	KP257480.1 Salvia miltiorrhiza clone 47 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087339.1	1e-158	transcription factor bHLH130
TrEMBL	A0A0H3YC37	0.0	A0A0H3YC37_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.B01333.1.p	1e-119	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-51	bHLH family protein