PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00018948-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 214aa    MW: 23348.1 Da    PI: 7.0008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00018948-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000877496123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C + F ++  L  H++ H
  SMil_00018948-RA_Salv 74 FPCNFCQRKFYSSQALGGHQNAH 96
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-672101No hitNo description
PROSITE profilePS5015711.09474101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKSSKSDHGV ENDCDAIDMS NQDSSKGSCS LIELSSNSIS LDLSLTFKAS QDAGADSVAS  60
STSESTPTAP PRAFPCNFCQ RKFYSSQALG GHQNAHKRER SLAKRAIRMG VFSDRYASLA  120
SLPLHGSPFK CLGIKSHASL HHPLVPPVRP PEHSRITPKF RDAYLFQPIY MEEEEDTHLL  180
WPGSFSADAS SPVTFLDKTA AFTSESTPDL TLRL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099925.11e-74zinc finger protein 4-like isoform X2
RefseqXP_020554558.12e-74zinc finger protein 4-like isoform X1
RefseqXP_020554559.11e-74zinc finger protein 4-like isoform X2
RefseqXP_020554560.11e-74zinc finger protein 4-like isoform X2
RefseqXP_020554561.11e-74zinc finger protein 4-like isoform X2
RefseqXP_020554562.11e-74zinc finger protein 4-like isoform X2
SwissprotQ392639e-35ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A4D9A2K42e-97A0A4D9A2K4_SALSN; Uncharacterized protein
STRINGPOPTR_0017s02490.12e-58(Populus trichocarpa)
STRINGGLYMA14G39280.42e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.15e-34zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]