PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019012-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 155aa    MW: 17534.3 Da    PI: 7.7059
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019012-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000172749123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C  C++ F++   L  H++ H
  SMil_00019012-RA_Salv 27 YECAFCKRGFTNAQALGGHMNIH 49
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-42553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-62554No hitNo description
PROSITE profilePS5015711.4062754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDQEKHGDHS DAPEKRDEDN AGVGRSYECA FCKRGFTNAQ ALGGHMNIHR KDKAKAKQKN  60
QEETSSNKPN HPRFAPPQPP HQRAAQAQAQ TQTQTQMSYQ VYLPLPNPSF QTGNYLPLWR  120
PDRLNDAGLR LRPAEQDGNA EEKQVDLELR LGHDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091220.13e-49transcriptional regulator SUPERMAN
TrEMBLA0A4D9ABH88e-45A0A4D9ABH8_SALSN; Uncharacterized protein
STRINGXP_009781958.18e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-16C2H2 family protein