PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019047-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 228aa MW: 25061.8 Da PI: 7.6851

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019047-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H SMil_00019047-RA_Salv 73 YECKTCSRTFSSFQALGGHRASH 95 99**********99999998887 PP
2	zf-C2H2	12.4	0.00046	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H SMil_00019047-RA_Salv 133 HECSICGSEFASGQALGGHMRRH 155 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-12	72	97	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.92E-9	72	95	No hit	No description
PROSITE profile	PS50157	11.011	73	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.92E-9	128	155	No hit	No description
Pfam	PF13912	1.5E-11	133	157	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.325	133	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	133	155	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	135	155	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNTQSLEEFS ASNDHMIVKG KRTKRPRPSS SASSDFNSAT SSSSTEEDED LANCLILLAR 60 GHHRPKATAV YVYECKTCSR TFSSFQALGG HRASHKKPKT AADFDQKRQP PPPPPEEDEF 120 VAITPPPSRP KIHECSICGS EFASGQALGG HMRRHRSAQT TAAAAAAEDS NSSHHDHHHR 180 HVVEKARNML SLDLNLPAPP EEEFRAFSSN QQPQRLVFAA AALVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	27	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089966.1	1e-71	zinc finger protein ZAT5-like
Swissprot	Q681X4	3e-55	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A4D8ZL77	8e-80	A0A4D8ZL77_SALSN; Uncharacterized protein
STRING	Migut.D02294.1.p	4e-67	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-37	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]