PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019218-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 161aa MW: 18140.4 Da PI: 7.7149

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019218-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	156	6.2e-49	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 e+dr+lPi+nv+rimkk+lP+ akisk+aket+qecvsefi+fvtseas++c++e+rkt+ngdd++wal++lGf++y +++ yl++ r SMil_00019218-RA_Salv 3 DENDRLLPISNVGRIMKKILPTSAKISKEAKETMQECVSEFIGFVTSEASERCHKENRKTVNGDDICWALSSLGFDNYSDTMPRYLQRLR 92 589************************************************************************************* PP NF-YB 92 elegek 97 e+e+++ SMil_00019218-RA_Salv 93 EIESQR 98 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-48	2	108	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-36	5	105	IPR009072	Histone-fold
Pfam	PF00808	3.1E-26	8	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-16	36	54	No hit	No description
PRINTS	PR00615	1.8E-16	55	73	No hit	No description
PRINTS	PR00615	1.8E-16	74	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTDENDRLLP ISNVGRIMKK ILPTSAKISK EAKETMQECV SEFIGFVTSE ASERCHKENR 60 KTVNGDDICW ALSSLGFDNY SDTMPRYLQR LREIESQRAK QQGERKMKEG CCQCTPSSPP 120 SLHFVAILER DGGGERERES SSSSSAKTSQ LDNNTCILRK N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-39	4	93	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-39	4	93	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092666.1	1e-56	nuclear transcription factor Y subunit B-4
Swissprot	O82248	1e-49	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A4D9ATQ4	6e-54	A0A4D9ATQ4_SALSN; Uncharacterized protein
STRING	XP_009760265.1	2e-52	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-51	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]