PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019381-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 412aa MW: 45001.4 Da PI: 9.9015

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019381-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00019381-RA_Salv 59 FVCEICNKGFQREQNLQLHRRGH 81 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.78E-5	57	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.3E-6	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.074	59	81	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.1E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0034	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	100	130	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	120	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MQENNMVESE ILSTESNILN QTKLDEQPVK KKRNLPGMPD PDADVIALSP KTLLATNRFV 60 CEICNKGFQR EQNLQLHRRG HNLPWKLRQR SGKELRKRVY VCPEASCVHH NPSRALGDLT 120 GIKKHFCRKH LDKKYKCHRC PKKYALQSDC KAHIKACGTR EYSCRCGTLF SRRDSFVTHR 180 AFCDALSREN ARSQPPPMVA PLPAWSPPPP PLSPSATVLS IQSSATLELA ENSNAELQPP 240 PPPAPTAAAT TSNNTRSSSG GFLGSMLSSS STYPSLLCSI AGPHQRSVSL SLFEKQQLHY 300 VPRQPAALSA TALLQKAAQM GATSSFLRGL GLALPSSSSI MKLDNTSLGL PSSSSLNELM 360 MSSSTLFRSK PATLDLLGLG VPAAEASSSG GFSAFRDDSE RKYNQSRFCK HD

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MQENNMVESE ILSTESNILN QTKLDEQPVK KKRNLPGMPD PDADVIALSP KTLLATNRFV  60
CEICNKGFQR EQNLQLHRRG HNLPWKLRQR SGKELRKRVY VCPEASCVHH NPSRALGDLT  120
GIKKHFCRKH LDKKYKCHRC PKKYALQSDC KAHIKACGTR EYSCRCGTLF SRRDSFVTHR  180
AFCDALSREN ARSQPPPMVA PLPAWSPPPP PLSPSATVLS IQSSATLELA ENSNAELQPP  240
PPPAPTAAAT TSNNTRSSSG GFLGSMLSSS STYPSLLCSI AGPHQRSVSL SLFEKQQLHY  300
VPRQPAALSA TALLQKAAQM GATSSFLRGL GLALPSSSSI MKLDNTSLGL PSSSSLNELM  360
MSSSTLFRSK PATLDLLGLG VPAAEASSSG GFSAFRDDSE RKYNQSRFCK HD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-27	132	192	4	64	Zinc finger protein JACKDAW
5b3h_F	4e-27	132	192	4	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083713.1	1e-140	protein indeterminate-domain 2-like isoform X1
Swissprot	Q9SCQ6	1e-126	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8JB63	1e-136	A0A1U8JB63_GOSHI; protein indeterminate-domain 2-like
STRING	Gorai.009G203800.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]