PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019414-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 239aa MW: 27203.5 Da PI: 7.6907

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019414-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	148	188	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrR +++ +++ +L++l+ + +K + a++L +A I+ Lq SMil_00019414-RA_Salv 148 RRRSQKLTDKITTLQKLVSPY-----GKTDTASVLLEASVSIQALQ 188 9****************99.....8*********99999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.432	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-6	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-7	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKNAILSHFS SYSYTNNGRN EVFTETPPIN SHLFPNDDSL CFYGDFSSDH AQIDPQNTVD 60 SILVTEYTST SHMPVQEHAF YQPWNTTFLQ QTHNEVGVVQ DARKRPAEAA TCSITNSGTN 120 EKERKKKRRT RLQGKLPKIH QEKEPTSRRR SQKLTDKITT LQKLVSPYGK TDTASVLLEA 180 SVSIQALQDQ IEHMFHIISG EQTTNVTGEK RSDLQIRGLC LLPSVVLEEL DRRLPQYLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KKKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8ZPF7	2e-75	A0A4D8ZPF7_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15444	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	1e-16	bHLH family protein