PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019417-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26620.9 Da    PI: 8.2137
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019417-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.5e-1997151256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++tk+q   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  SMil_00019417-RA_Salv  97 RKKLRLTKTQSALLEESFKHHSTLNPKQKQDLAMELKLRPRQVEVWFQNRRARTK 151
                            678899***********************************************98 PP
2HD-ZIP_I/II120.11.2e-3897184188
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+k q++lLEesF+++++L+p++K++la eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk+++++l++en+rL+ke ++L+
  SMil_00019417-RA_Salv  97 RKKLRLTKTQSALLEESFKHHSTLNPKQKQDLAMELKLRPRQVEVWFQNRRARTKLKQTEVECELLKKCCETLTDENRRLQKELHDLK 184
                            69**********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1885154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-1790157IPR009057Homeodomain-like
PROSITE profilePS5007116.92593153IPR001356Homeobox domain
SMARTSM003895.6E-1595157IPR001356Homeobox domain
PfamPF000462.3E-1697151IPR001356Homeobox domain
CDDcd000862.55E-1597154No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SMARTSM003404.6E-17153193IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-7153184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGVDDDSCQT RLVLGLGIRS SAENSKKSLS SSPSLTLTLF GETINKRVDV CSNDSAASSL  60
SNASVKRERE VGSEEVDETE RVSSRGSDED DDGSNGRKKL RLTKTQSALL EESFKHHSTL  120
NPKQKQDLAM ELKLRPRQVE VWFQNRRART KLKQTEVECE LLKKCCETLT DENRRLQKEL  180
HDLKLAPPLY MKLPAAATLT ICPTCERFSS SGGGAAENAT KSPFAKPHFY NHFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-111homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-79HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9H1F91e-113A0A2G9H1F9_9LAMI; Transcription factor HEX
STRINGXP_009338969.11e-100(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]