PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019539-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 170aa    MW: 18366.5 Da    PI: 5.0194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019539-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183181155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr ++ +g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+ +l+g
  SMil_00019539-RA_Salv 31 PVYRGVRKRR-WGKWVSEIREPKK---KTRIWLGSFPAPEMAARAYDVAAYCLKG 81
                           68*****887.**********854...6************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-123181IPR001471AP2/ERF domain
SMARTSM003803.2E-343295IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-213291IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-313290IPR001471AP2/ERF domain
PROSITE profilePS5103223.4593289IPR001471AP2/ERF domain
PRINTSPR003672.2E-123344IPR001471AP2/ERF domain
CDDcd000181.89E-313391No hitNo description
PRINTSPR003672.2E-127191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEQPPPCNND HPSTAAAAAA AETLGGGTRH PVYRGVRKRR WGKWVSEIRE PKKKTRIWLG  60
SFPAPEMAAR AYDVAAYCLK GGKAQLNFPD DIGLLPRPST SAARDIQAAA ALAANMAAEK  120
SDSAAAQGGG GDDFWAEIEL PELMNEPSPE VWCWSSNNCG DFYGDDDRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-172594777Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835591.11e-77PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI22e-53ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A022RGF53e-76A0A022RGF5_ERYGU; Uncharacterized protein
STRINGMigut.N01538.1.p5e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]