PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019642-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 267aa    MW: 29219.6 Da    PI: 5.7553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019642-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05242264223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C+ C+ksF +   L++H +  H
  SMil_00019642-RA_Salv 242 SCKSCTKSFGSEKALESHTKAkH 264
                            6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.284241267IPR007087Zinc finger, C2H2
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEFWGVEVKS GEPLKVVPGE NMVLHLSQAC LGESKKEKAN DSVCLFVNVD GKKLVLGTLI  60
TEKLPQQQFD LVFDRDFELS HNWKSGSIYF YGYKANNPFD EYPLNCIFPF KAISFIPTMQ  120
SEESDESDSE EDIPLVTVNN ARPEPKVKQE KPAEADGDDS DSDESGESDE DTPKKAESSK  180
KRAAESATKT PVQDKKAKVT PQKTDGKKVS GHVATPYPAK QAGKTPANKP NQQTPQSGGS  240
VSCKSCTKSF GSEKALESHT KAKHASK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101488.11e-120histone deacetylase HDT1
SwissprotQ6V9I62e-87HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A4D8YXN01e-125A0A4D8YXN0_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000216442e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-33histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]