PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019739-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 571aa    MW: 64337.5 Da    PI: 5.2134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019739-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.5e-07460504655
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i  + +eL +l+P         +++ ae+L+ A +Y+k Lq
  SMil_00019739-RA_Salv 460 SIAARQRRRKITVKTQELGKLVPGgH------RMNTAEMLQSAYNYVKFLQ 504
                            6788*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.373454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-10455510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-11456514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-7457508No hitNo description
SMARTSM003534.0E-9460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4460504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MLMDFPWNWI ISQLQPNPHP FYCRTNNNNP RRPCSTSPTA TSSTITRCRN LSCPPPLPQF  60
PAADFSTRIC ENAKTNELIR AEHRSQAEAA EDHSEDAGAR EAGSRRAEDE HGGDAAIRHN  120
YIKFLQAQVA LLEFLGSHHQ EVPFEGEEEL QNLLESPLIQ EKLYSTQHCL LPNNAGFSTL  180
DYQRWMGALD FELPDRAVAG WNAQSCFWSS DTAGLVVFTL ILTGGLVAMM VDVSFFEGLV  240
IDGVWVGVSA TSFFSDRVRS TLGVGWSDLL DLRDRLDSAV SRRACLRGGS FRSRCAASWS  300
FYLLLPSACV FLAWFHVLWW GQVIPSSSMA LSYYSNWTSF QQPDYSGDDP ELQSLLNPDD  360
YFADSFCNSL LCDDLTYHAN GLPLELDNLT TATQPPPFLL PHQQQQSQAP LFHFPNRHKL  420
YDYSLPEFVL PPPLPQFPAA DFSTRICENA KNETSLSAQS IAARQRRRKI TVKTQELGKL  480
VPGGHRMNTA EMLQSAYNYV KFLQAQVALL EFLGSHHQEV PFEGEEELQN LLESPLIQEK  540
LYSTQHCLLP NKLAEQVPLL KSNPHLLEKD H
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574870.0KP257487.1 Salvia miltiorrhiza clone 54 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0H3YB370.0A0A0H3YB37_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-17bHLH family protein