PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019746-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 127aa MW: 13939 Da PI: 7.4258

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019746-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H SMil_00019746-RA_Salv 52 HECPICFKVFPSGQALGGHKRSH 74 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.0E-8	2	21	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.84E-5	49	75	No hit	No description
PROSITE profile	PS50157	8.974	52	74	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-12	52	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MCKKAFQSYQ ALGGHRASHK KFKGCCAPQE TEDSQSQLGE NLMMMMKKSK EHECPICFKV 60 FPSGQALGGH KRSHLIVVDQ AKSSSPPLSR GFLDLNLPAP AEEEEEGCDD FIKPWWIGAG 120 LGLLSTS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072829.1	7e-41	zinc finger protein ZAT4-like
Swissprot	Q9SHD0	3e-26	ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBL	A0A4D9A1N1	6e-44	A0A4D9A1N1_SALSN; Uncharacterized protein
STRING	cassava4.1_031696m	3e-34	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4481	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	2e-24	C2H2-like zinc finger protein