PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019809-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 233aa    MW: 26599.8 Da    PI: 9.5195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019809-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-2199148255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +grW+AeIrdp++   rkr++lg+++t+eeAa  +++a+ +l+g
  SMil_00019809-RA_Salv  99 KFRGVRQRP-WGRWAAEIRDPTQ---RKRVWLGTYDTPEEAATVYDKAAVRLKG 148
                            89*******.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.2E-564233IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.104.1E-3098157IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2199156IPR016177DNA-binding domain
SMARTSM003803.1E-3499162IPR001471AP2/ERF domain
PfamPF008472.5E-1399148IPR001471AP2/ERF domain
PROSITE profilePS5103223.80299156IPR001471AP2/ERF domain
CDDcd000187.55E-2999157No hitNo description
PRINTSPR003677.0E-10100111IPR001471AP2/ERF domain
PRINTSPR003677.0E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEELQPLVKF TEHVVTTNKL INHPRSANLR RKVVRIVLAD ADATDSSSDE SDASVHRVRR  60
HVQEITFRNS PPHHQKLDSR QTKRRRRTAP RNDASRRRKF RGVRQRPWGR WAAEIRDPTQ  120
RKRVWLGTYD TPEEAATVYD KAAVRLKGPA AAINFPEPAA LTESDGVPSG KDAALSPTSV  180
LRYEEFTSFD GFGVDFGFDF DWPLSLPVIG MSGKFCAEEF GEFDFDDFIN ELR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1895156163ATERF1
3gcc_A1e-1895156163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18498RRRTAPRNDASRRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080643.11e-100pathogenesis-related genes transcriptional activator PTI6
SwissprotO046821e-67PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2G9HTG61e-111A0A2G9HTG6_9LAMI; Uncharacterized protein
STRINGMigut.D00812.1.p5e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-30cytokinin response factor 1