PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019907-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 210aa MW: 22976.5 Da PI: 9.6546

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019907-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.1e-13	50	95	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+ErrRR+riN +++L+++lP+ K +Ka+ L +Av+ +k+L SMil_00019907-RA_Salv 50 SHKEAERRRRKRINGHIATLKSMLPNT-----IKTDKASLLGEAVRRVKEL 95 8***********************8.....69**********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-10	50	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-13	50	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-14	50	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00215	127	181	No hit	No description
SuperFamily	SSF55021	2.43E-5	127	192	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.9E-4	127	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MFSIPSLYDM GTCSDSYDIV GMLSSPTNSD NPNLSPRSMA EAKAVAASIS HKEAERRRRK 60 RINGHIATLK SMLPNTIKTD KASLLGEAVR RVKELKKSAA ELEEGPSEAD ELKVWQCEKT 120 GLMKAALSCD DRPEIIVDMI EALKAAEAKV VRAEMSTVGG RTKSVLWVTQ NDAGLGPLRR 180 ALKMVMDKST LEASSGQGLP ATKRPRYYHL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257489	0.0	KP257489.1 Salvia miltiorrhiza clone 56 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022884570.1	1e-84	transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-38	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0H3YBT0	1e-152	A0A0H3YBT0_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.H02300.1.p	1e-83	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7283	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-36	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]