PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019923-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 179aa    MW: 19732.6 Da    PI: 4.3853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019923-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-171160255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr +k +g++v+eIr p++   r r++lg+++tae Aa+a +aa  +l+g
  SMil_00019923-RA_Salv 11 KYRGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAERAARAFDAALFCLRG 60
                           8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-251070No hitNo description
SMARTSM003804.6E-321174IPR001471AP2/ERF domain
PfamPF008475.7E-101160IPR001471AP2/ERF domain
PROSITE profilePS5103221.7331168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-291169IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-201169IPR016177DNA-binding domain
PRINTSPR003676.0E-101223IPR001471AP2/ERF domain
PRINTSPR003676.0E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTDTAAEAAA KYRGVRKRKW GKYVSEIRLP NSRERIWLGS YDTAERAARA FDAALFCLRG  60
RSANFNFPDD PPDIPGGESL SAPEIQAVAQ SYGNSYGGAA ADGFRGRASR DAATGLDGAE  120
AVDLVDGSFW EMVDNAGCVS DSRGFAEAAE MYVVDPHYEA RVYEDDDVEY CYDHRLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1710701374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022848905.12e-53ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-41ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A4D8ZP087e-71A0A4D8ZP08_SALSN; Uncharacterized protein
STRINGMigut.A00330.1.p1e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-29ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]