PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019941-RA_Salv
Common NameMYB27
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 89aa    MW: 10002.5 Da    PI: 9.3632
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019941-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++eEd +l+ +++ +G+g +W + + ++g++R++k+c++rw++yl
  SMil_00019941-RA_Salv 14 RGPWSPEEDAKLKSYIENHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62
                           89**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.428966IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-211261IPR009057Homeodomain-like
SMARTSM007171.3E-111364IPR001005SANT/Myb domain
PfamPF002498.1E-161462IPR001005SANT/Myb domain
SuperFamilySSF466894.05E-191588IPR009057Homeodomain-like
CDDcd001676.29E-91662No hitNo description
Gene3DG3DSA:1.10.10.601.2E-56287IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE NHGTGGNWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FTEDEDNLIC SLYISIGSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593811e-147KF059381.1 Salvia miltiorrhiza MYB-related transcription factor (MYB27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498936.12e-59transcription factor RAX3-like isoform X2
SwissprotQ9M2Y96e-58RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A059PRQ15e-59A0A059PRQ1_SALMI; MYB-related transcription factor
TrEMBLA0A1S2Y3W05e-58A0A1S2Y3W0_CICAR; transcription factor RAX3-like isoform X2
TrEMBLV5K2033e-59V5K203_SALMI; R2R3 MYB transcription factor 87 (Fragment)
STRINGGLYMA17G16980.11e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-60myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]