PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00019965-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Protein Properties

Length: 216aa MW: 25262.5 Da PI: 10.3296

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00019965-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.4	5.2e-13	20	101	13	97
TT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l +p f+++h + ++ l+l+++ g sW vk+ +k g +++++GW++Fvk+n++ e ++F+ s +v +f SMil_00019965-RA_Salv 20 ETKLKIPAAFVKDHglHLLPRL--SLQLKTQPGrASWAVKI--KKINGDFYIADGWSQFVKDNDILEMKLLIFYIAAASAL--RVAIF 101 44599*******66444555..59999955549**..99999************************6553444..77776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.194	8	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.31E-14	10	106	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.58E-10	12	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.6E-15	18	105	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.3E-4	19	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-10	21	101	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.04E-8	117	204	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.065	118	216	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.7E-8	118	206	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
LSCRNQMAKS FMMFCYHDFE TKLKIPAAFV KDHGLHLLPR LSLQLKTQPG RASWAVKIKK 60 INGDFYIADG WSQFVKDNDI LEMKLLIFYI AAASALRVAI FGHDSCLELP PSSRGVDRPR 120 FDFVLTQARK YRTYLFHEFA EKADLMDKKS VVLQFPPKRR HWPVLVQKNR LRRRCTLELT 180 QGWVDFRVAN GLVYGRRYSF EFDSAENVIL VKELKN

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6635	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	9e-09	B3 family protein