PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00019994-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 248aa    MW: 28111.4 Da    PI: 7.218
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00019994-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1863116356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  SMil_00019994-RA_Salv  63 KKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 116
                            4557899**********************************************9 PP
2HD-ZIP_I/II131.82.7e-4262153192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++alk++n++L++++++L+
  SMil_00019994-RA_Salv  62 EKKRRLNLEQVKALEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFEALKADNDSLKSQNKKLQ 149
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            ++l+
  SMil_00019994-RA_Salv 150 NQLS 153
                            9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1948120IPR009057Homeodomain-like
PROSITE profilePS5007116.76358118IPR001356Homeobox domain
SMARTSM003894.1E-1861122IPR001356Homeobox domain
CDDcd000863.40E-1563119No hitNo description
PfamPF000462.9E-1563116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1965125IPR009057Homeodomain-like
PRINTSPR000319.0E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000319.0E-698114IPR000047Helix-turn-helix motif
PfamPF021834.6E-15118156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAYVPAESMF RNHDVDAHFP SSSPQDFHGV PEFLMRRSMS FSGMDRAEDD EGSDDGSQML  60
GEKKRRLNLE QVKALEKSFE LGNKLEPERK MQLARALGLQ PRQIAIWFQN RRARWKTKQL  120
EKDYDILKRQ FEALKADNDS LKSQNKKLQN QLSGMKRRGE AGAGAGAINL NKENEGSWSN  180
GSDTSCEVNL KASTEYNQRS KHAAAAMFPA AATLAHHSLP AECFGNMFGG IEETPQEFWP  240
WSEQQNFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.11e-121homeobox-leucine zipper protein HOX21
SwissprotQ8LC032e-69ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A4D9BTZ81e-135A0A4D9BTZ8_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00906.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-67HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]