PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020255-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 152aa    MW: 16203.1 Da    PI: 6.7517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020255-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.2e-42151141100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C ++C++a yfpae+p kf nvhk+FGa nv+kll+++p+++red+++sl+yeAear++dPvyG+vg i+ lq+q+ 
  SMil_00020255-RA_Salv  15 PCAACKFLRRRCLSGCIFAAYFPAEEPTKFVNVHKIFGAGNVSKLLNEIPPHQREDTVNSLAYEAEARLKDPVYGCVGAITILQRQVF 102
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l++el++++++
  SMil_00020255-RA_Salv 103 TLQQELDATNAH 114
                            ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.13414115IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4115112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASSSSSSSS NSSPPCAACK FLRRRCLSGC IFAAYFPAEE PTKFVNVHKI FGAGNVSKLL  60
NEIPPHQRED TVNSLAYEAE ARLKDPVYGC VGAITILQRQ VFTLQQELDA TNAHIMRFAT  120
GNGAPSSGNN SGFVDPNTGP DYWAGKGEDG GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-6051271125LOB family transfactor Ramosa2.1
5ly0_B5e-6051271125LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850821.15e-67PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ8L8Q33e-59LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A4D9A4C84e-81A0A4D9A4C8_SALSN; Uncharacterized protein
STRINGMigut.H00081.1.p2e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-60LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]