PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00020272-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 186aa    MW: 20714.1 Da    PI: 8.8435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00020272-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-1898148255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp     k+ r++lg+++ta +Aa+a++ a+ k++g
  SMil_00020272-RA_Salv  98 RYRGVRRRP-WGKYAAEIRDP---ArKSNRVWLGTYDTAVDAARAYDCAAFKIRG 148
                            7********.**********8...5567*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.56698156IPR001471AP2/ERF domain
PfamPF008471.4E-1298148IPR001471AP2/ERF domain
SMARTSM003806.4E-3598162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3198157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2398158IPR016177DNA-binding domain
PRINTSPR003672.0E-1399110IPR001471AP2/ERF domain
CDDcd000188.97E-23106156No hitNo description
PRINTSPR003672.0E-13138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMANSDEGLT LDFIRQHLFE DFSFADSFFD TLDVCFSDVV AAASPSSMSD SSSDPNRPDS  60
DFRHDFFDVE TKPHICPPKR AKPDSVGVGS DPVMAWRRYR GVRRRPWGKY AAEIRDPARK  120
SNRVWLGTYD TAVDAARAYD CAAFKIRGSK AILNFPMDAG KSEPPASAGR RRRREKRADG  180
GANPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2697163470ATERF1
3gcc_A6e-2697163470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858579.11e-66PREDICTED: ethylene-responsive transcription factor ERF106
TrEMBLA0A2U8UYM91e-130A0A2U8UYM9_SALMI; Ethylene-responsive transcription factor ERF6
STRINGMigut.F00526.1.p6e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-20ERF family protein